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M3a: HiddenMarkov is the vital package, JSON is hand-rolled
Correct the R dependency: HiddenMarkov (CRAN) for HMM regime detection (Viterbi, Baum-Welch); JSON I/O for Hub protocol is hand-rolled, not jsonlite. Everything else uses base R primitives.
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@@ -75,13 +75,16 @@ else
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fi
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# ---------------------------------------------------------------------------
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# R + jsonlite (economy organ: M3a statistical sims)
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# R + HiddenMarkov (economy organ: M3a statistical sims)
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# ---------------------------------------------------------------------------
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if command -v Rscript >/dev/null 2>&1 && Rscript -e 'library(jsonlite)' >/dev/null 2>&1; then
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log "R + jsonlite already present; skipping."
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if command -v Rscript >/dev/null 2>&1 && Rscript -e 'library(HiddenMarkov)' >/dev/null 2>&1; then
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log "R + HiddenMarkov already present; skipping."
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else
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log "Installing r-base-core r-cran-jsonlite via apt-get ..."
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sudo apt-get install -y r-base-core r-cran-jsonlite || die "apt-get install of r-base-core/r-cran-jsonlite failed."
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log "Installing r-base-core via apt-get ..."
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sudo apt-get install -y r-base-core || die "apt-get install of r-base-core failed."
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log "Installing HiddenMarkov from CRAN ..."
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Rscript -e 'install.packages("HiddenMarkov", repos="https://cloud.r-project.org", quiet=TRUE)' \
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|| die "CRAN install of HiddenMarkov failed."
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fi
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# ---------------------------------------------------------------------------
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